Downloading external datasets

Blast

Download and extract the nr and pdbaa databases from ftp://ftp.ncbi.nlm.nih.gov/blast/db/, and change the blast_db_dir variable in your configuration file to point to the directory containing the uncompressed files.

PDB

Download the contents of the ftp://ftp.wwpdb.org/pub/pdb/data/structures/divided/pdb/ folder, and change the pdb_dir variable in your configuration file to point to the directory containing the downloaded data.